PlantPromoterDB promoter information of AT5G25470.2

Summary of Gene (AT5G25470.2)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G25470 TAIR NCBI
Gene model	AT5G25470.2
Description	DNA binding; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: DNA binding (TAIR:AT5G25475.3); Has 70 Blast hits to 70 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

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Overview

Focused view (chromosome 5: 8886134-8884935)

`Genome position from initiation codon` `TSS from cDNA TSS information AT5G25470.2 5'->3' (-) Promoter sequence AT5G25520.1 AT5G25520.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G25470.2

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 15 + 8885115 AT5G25520.1, AT5G25520.2

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	15	+	8885115	AT5G25520.1, AT5G25520.2

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone + 8885088 AT5G25520.1, AT5G25520.2

TSS clone C clone + 8885128 AT5G25520.1, AT5G25520.2

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	+	8885088	AT5G25520.1, AT5G25520.2
TSS clone	`C`	clone	+	8885128	AT5G25520.1, AT5G25520.2

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TACGTGTCA - 8884931 8884939 AT5G25510.1

AtREG557 TACGTGTC ABA, DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

AtREG389 ACGTGTCA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

REG ATCCAACGG - 8884947 8884955 AT5G25510.1

AtREG586 ATCCAACG PPDB Motif CCAACGG PLACE Motif

AtREG554 TCCAACGG PPDB Motif CCAACGG PLACE Motif YAACKG, CNGTTR

REG TAAATGGGCCTTAG - 8884991 8885004 AT5G25510.1

AtREG443 TAAATGGG       PPDB Motif GCCCA PLACE Motif

AtREG386 AAATGGGC      PPDB Motif GCCCA PLACE Motif

AtREG361   AATGGGCC     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354    ATGGGCCT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG353     TGGGCCTT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG351      GGGCCTTA PPDB Motif GCCCA PLACE Motif GGGCC

AtREG577       GGCCTTAG PPDB Motif PLACE Motif

REG TAAATGGGCTTTAA - 8885022 8885035 AT5G25510.1

AtREG443 TAAATGGG       PPDB Motif GCCCA PLACE Motif

AtREG386 AAATGGGC      PPDB Motif GCCCA PLACE Motif

AtREG372   AATGGGCT     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378    ATGGGCTT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376     TGGGCTTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG365      GGGCTTTA PPDB Motif GCCCA PLACE Motif

AtREG545       GGCTTTAA PPDB Motif PLACE Motif

REG ATAAGGCC - 8885043 8885050 AT5G25510.1

AtREG425 ATAAGGCC PPDB Motif AACCG(G/A) PLACE Motif

REG TGACACGTA + 8884931 8884939 AT5G25520.1, AT5G25520.2

AtREG389 TGACACGT ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

AtREG557 GACACGTA ABA, DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

REG CCGTTGGAT + 8884947 8884955 AT5G25520.1, AT5G25520.2

AtREG554 CCGTTGGA PPDB Motif CCAACGG PLACE Motif YAACKG, CNGTTR

AtREG586 CGTTGGAT PPDB Motif CCAACGG PLACE Motif

REG CTAAGGCCCATTTA + 8884991 8885004 AT5G25520.1, AT5G25520.2

AtREG577 CTAAGGCC       PPDB Motif PLACE Motif

AtREG351 TAAGGCCC      PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353   AAGGCCCA     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354    AGGCCCAT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG361     GGCCCATT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG386      GCCCATTT PPDB Motif GCCCA PLACE Motif

AtREG443       CCCATTTA PPDB Motif GCCCA PLACE Motif

REG TTAAAGCCCATTTA + 8885022 8885035 AT5G25520.1, AT5G25520.2

AtREG545 TTAAAGCC       PPDB Motif PLACE Motif

AtREG365 TAAAGCCC      PPDB Motif GCCCA PLACE Motif

AtREG376   AAAGCCCA     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378    AAGCCCAT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG372     AGCCCATT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG386      GCCCATTT PPDB Motif GCCCA PLACE Motif

AtREG443       CCCATTTA PPDB Motif GCCCA PLACE Motif

REG GGCCTTAT + 8885043 8885050 AT5G25520.1, AT5G25520.2

AtREG425 GGCCTTAT PPDB Motif AACCG(G/A) PLACE Motif