PlantPromoterDB promoter information of AT5G25610.1
Summary of Gene (AT5G25610.1)
|
Overview
|
Focused view (chromosome 5: 8917684-8916485)
|
Genome position
from initiation codon TSS from cDNA TSS information AT5G25610.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT5G25610.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 8 | - | 8916721 | -37 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 8916800 | -116 |
| TSS clone | A | clone | - | 8916770 | -86 |
| TSS clone | C | clone | - | 8916724 | -40 |
| TSS clone | T | clone | - | 8916723 | -39 |
| TSS clone | A | clone | - | 8916721 | -37 |
| TSS clone | A | clone | - | 8916720 | -36 |
| TSS clone | T | clone | - | 8916714 | -30 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TACTATAAATT | - | 8916750 | 8916760 | -66 | -76 |
| Y Patch | CTTCTTCTCCTC | - | 8916722 | 8916733 | -38 | -49 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATCGGCCCAAAT | - | 8916840 | 8916851 | -156 | -167 | |||
| AtREG555 | ATCGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG393 | TCGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG414 | CGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG373 | GGCCCAAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG421 | GCCCAAAT | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||