PlantPromoterDB promoter information of AT5G27120.1

Summary of Gene (AT5G27120.1)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G27120 TAIR NCBI
Gene model	AT5G27120.1
Description	SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; has similarity to MAR binding NOP58 protein

#

Overview

Focused view (chromosome 5: 9540287-9541486)

`Genome position from initiation codon` `TSS from cDNA TSS information AT5G27120.1 5'->3' (+) Promoter sequence AT5G27110.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G27120.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone + 9540925 -362

TSS clone peak C clone + 9540926 -361

TSS clone G clone + 9540927 -360

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	+	9540925	-362
TSS clone peak	`C`	clone	+	9540926	-361
TSS clone	`G`	clone	+	9540927	-360

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box ACTATAAAAA + 9540892 9540901 -395 -386

Y Patch CCTTCTTC + 9540880 9540887 -407 -400

Y Patch CTCTCTCT + 9540942 9540949 -345 -338

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`ACTATAAAAA`	+	9540892	9540901	-395	-386
Y Patch	`CCTTCTTC`	+	9540880	9540887	-407	-400
Y Patch	`CTCTCTCT`	+	9540942	9540949	-345	-338
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG ACGACGTCGTTTA + 9540739 9540751 -548 -536

AtREG431 ACGACGTCGT    PPDB Motif ACGT PLACE Motif ACGT

AtREG493    ACGTCGTT   PPDB Motif ACGT PLACE Motif ACGT

AtREG415     CGTCGTTT PPDB Motif PLACE Motif

AtREG565      GTCGTTTA PPDB Motif PLACE Motif

REG CTAATGGGCCAA + 9540754 9540765 -533 -522

AtREG558 CTAATGGG     PPDB Motif GCCCA PLACE Motif

AtREG357 TAATGGGC    PPDB Motif GCCCA PLACE Motif

AtREG361   AATGGGCC   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG490    ATGGGCCA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG484     TGGGCCAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG ATTAGGCCCAAAA + 9540771 9540783 -516 -504

AtREG506 ATTAGGCC      PPDB Motif PLACE Motif

AtREG360 TTAGGCCC     PPDB Motif GCCCA PLACE Motif GGGCC

AtREG358   TAGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356    AGGCCCAA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG373     GGCCCAAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG529      GCCCAAAA PPDB Motif GCCCA PLACE Motif

REG GCGTTTTA + 9540809 9540816 -478 -471

AtREG564 GCGTTTTA PPDB Motif AAACG(C/G) PLACE Motif

REG AAAACGCGCCG + 9540832 9540842 -455 -445

AtREG566 AAAACGCG    PPDB Motif AAACG(C/G) PLACE Motif

AtREG538    ACGCGCCG PPDB Motif ACGCGC PLACE Motif

REG CGCAGCGTTTTGA + 9540856 9540868 -431 -419

AtREG369 CGCAGCGT      PPDB Motif PLACE Motif

AtREG626   CAGCGTTT    PPDB Motif AAACG(C/G) PLACE Motif

AtREG585     GCGTTTTG PPDB Motif AAACG(C/G) PLACE Motif CAAAACGC

AtREG653      CGTTTTGA PPDB Motif AAACG(C/G) PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`ACGACGTCGTTTA`		+	9540739	9540751	-548	-536
	AtREG431	`ACGACGTCGT`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT`
	AtREG493	`ACGTCGTT`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT`
	AtREG415	`CGTCGTTT`		PPDB Motif		PLACE Motif
	AtREG565	`GTCGTTTA`		PPDB Motif		PLACE Motif
REG	`CTAATGGGCCAA`		+	9540754	9540765	-533	-522
	AtREG558	`CTAATGGG`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG357	`TAATGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG361	`AATGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG490	`ATGGGCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG484	`TGGGCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
REG	`ATTAGGCCCAAAA`		+	9540771	9540783	-516	-504
	AtREG506	`ATTAGGCC`		PPDB Motif		PLACE Motif
	AtREG360	`TTAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG358	`TAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`AGGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG373	`GGCCCAAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG529	`GCCCAAAA`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`GCGTTTTA`		+	9540809	9540816	-478	-471
	AtREG564	`GCGTTTTA`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
REG	`AAAACGCGCCG`		+	9540832	9540842	-455	-445
	AtREG566	`AAAACGCG`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
	AtREG538	`ACGCGCCG`		PPDB Motif	`ACGCGC`	PLACE Motif
REG	`CGCAGCGTTTTGA`		+	9540856	9540868	-431	-419
	AtREG369	`CGCAGCGT`		PPDB Motif		PLACE Motif
	AtREG626	`CAGCGTTT`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
	AtREG585	`GCGTTTTG`		PPDB Motif	`AAACG(C/G)`	PLACE Motif	`CAAAACGC`
	AtREG653	`CGTTTTGA`		PPDB Motif	`AAACG(C/G)`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None