PlantPromoterDB promoter information of AT5G27440.1

Summary of Gene (AT5G27440.1)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G27440 TAIR NCBI
Gene model	AT5G27440.1
Description	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: shoot, shoot apex, flower, seed; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage; Has 3 Blast hits to 3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

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Overview

Focused view (chromosome 5: 9691297-9690098)

`Genome position from initiation codon` `TSS from cDNA TSS information AT5G27440.1 5'->3' (-) Promoter sequence AT5G27450.1 AT5G27450.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G27440.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone peak A clone - 9690317 -20

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone peak	`A`	clone	-	9690317	-20

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTCTTCTTC - 9690285 9690293 12 4

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTCTTCTTC`	-	9690285	9690293	12	4
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TTCGGTTTGG - 9690407 9690416 -110 -119

AtREG568 TTCGGTTT   PPDB Motif AACCG(G/A) PLACE Motif

AtREG550   CGGTTTGG PPDB Motif AACCG(G/A) PLACE Motif

REG ACCGGTTC - 9690423 9690430 -126 -133

AtREG528 ACCGGTTC PPDB Motif AACCG(G/A) PLACE Motif

REG TTTAACCG - 9690500 9690507 -203 -210

AtREG645 TTTAACCG PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

REG TCGGTTTAG - 9690513 9690521 -216 -224

AtREG514 TCGGTTTA PPDB Motif AACCG(G/A) PLACE Motif

AtREG511 CGGTTTAG PPDB Motif AACCG(G/A) PLACE Motif

REG TTTCCGGTTAAA - 9690543 9690554 -246 -257

AtREG644 TTTCCGGT     PPDB Motif AACCG(G/A) PLACE Motif

AtREG534 TTCCGGTT    PPDB Motif AACCG(G/A) PLACE Motif

AtREG621   TCCGGTTA   PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG501    CCGGTTAA PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG645     CGGTTAAA PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

REG ATAACCGGTTC - 9690565 9690575 -268 -278

AtREG548 ATAACCGG    PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG503 TAACCGGT   PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG528    ACCGGTTC PPDB Motif AACCG(G/A) PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TTCGGTTTGG`		-	9690407	9690416	-110	-119
	AtREG568	`TTCGGTTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG550	`CGGTTTGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`ACCGGTTC`		-	9690423	9690430	-126	-133
	AtREG528	`ACCGGTTC`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`TTTAACCG`		-	9690500	9690507	-203	-210
	AtREG645	`TTTAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
REG	`TCGGTTTAG`		-	9690513	9690521	-216	-224
	AtREG514	`TCGGTTTA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG511	`CGGTTTAG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`TTTCCGGTTAAA`		-	9690543	9690554	-246	-257
	AtREG644	`TTTCCGGT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG534	`TTCCGGTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG621	`TCCGGTTA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
	AtREG501	`CCGGTTAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
	AtREG645	`CGGTTAAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
REG	`ATAACCGGTTC`		-	9690565	9690575	-268	-278
	AtREG548	`ATAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
	AtREG503	`TAACCGGT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
	AtREG528	`ACCGGTTC`		PPDB Motif	`AACCG(G/A)`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 8 + 9690619 AT5G27450.1, AT5G27450.2

TSS peak G 4 + 9691034 AT5G27450.1, AT5G27450.2

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	8	+	9690619	AT5G27450.1, AT5G27450.2
TSS peak	`G`	4	+	9691034	AT5G27450.1, AT5G27450.2

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone + 9690617 AT5G27450.1, AT5G27450.2

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	+	9690617	AT5G27450.1, AT5G27450.2

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTTTCTC + 9690655 9690662 AT5G27450.1, AT5G27450.2

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTTTCTC`	+	9690655	9690662	AT5G27450.1, AT5G27450.2
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CCAAACCGAA + 9690407 9690416 AT5G27450.1, AT5G27450.2

AtREG550 CCAAACCG   PPDB Motif AACCG(G/A) PLACE Motif

AtREG568   AAACCGAA PPDB Motif AACCG(G/A) PLACE Motif

REG GAACCGGT + 9690423 9690430 AT5G27450.1, AT5G27450.2

AtREG528 GAACCGGT PPDB Motif AACCG(G/A) PLACE Motif

REG CGGTTAAA + 9690500 9690507 AT5G27450.1, AT5G27450.2

AtREG645 CGGTTAAA PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

REG CTAAACCGA + 9690513 9690521 AT5G27450.1, AT5G27450.2

AtREG511 CTAAACCG PPDB Motif AACCG(G/A) PLACE Motif

AtREG514 TAAACCGA PPDB Motif AACCG(G/A) PLACE Motif

REG TTTAACCGGAAA + 9690543 9690554 AT5G27450.1, AT5G27450.2

AtREG645 TTTAACCG     PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG501 TTAACCGG    PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG621   TAACCGGA   PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG534    AACCGGAA PPDB Motif AACCG(G/A) PLACE Motif

AtREG644     ACCGGAAA PPDB Motif AACCG(G/A) PLACE Motif

REG GAACCGGTTAT + 9690565 9690575 AT5G27450.1, AT5G27450.2

AtREG528 GAACCGGT    PPDB Motif AACCG(G/A) PLACE Motif

AtREG503   ACCGGTTA PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG548    CCGGTTAT PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

REG CCCAATTA + 9690877 9690884 AT5G27450.1, AT5G27450.2

AtREG600 CCCAATTA PPDB Motif GCCCA PLACE Motif