Summary of Gene (AT5G27470.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT5G27470.1 5'->3' (+) Promoter sequence AT5G27460.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 8 | + | 9695027 | -60 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 9695008 | -79 |
TSS clone | C | clone | + | 9695019 | -68 |
TSS clone | T | clone | + | 9695028 | -59 |
TSS clone | G | clone | + | 9695036 | -51 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTTCCTTCTTCTTCCTC | + | 9694991 | 9695007 | -96 | -80 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TGGTTCGGT | + | 9694841 | 9694849 | -246 | -238 | |||
AtREG655 | TGGTTCGG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG451 | GGTTCGGT | PPDB Motif |   | PLACE Motif |   | ||||
REG | ATTTGGGCCGTA | + | 9694888 | 9694899 | -199 | -188 | |||
AtREG421 | ATTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG373 | TTTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG414 | TTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG368 | TGGGCCGT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG499 | GGGCCGTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
REG | AGTTGGGCTTACCCGGCCCATAT | + | 9694908 | 9694930 | -179 | -157 | |||
AtREG607 | AGTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG574 | GTTGGGCT | PPDB Motif | GCCCA, CCAACGG  | PLACE Motif | TGGGCY  | ||||
AtREG407 | TTGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG426 | TGGGCTTA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG404 | CCCGGCCC | CK | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | |||
AtREG457 | CCGGCCCA | CK | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | |||
AtREG380 | CGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG364 | GGCCCATA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG432 | GCCCATAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ATAAGCCC | + | 9694939 | 9694946 | -148 | -141 | |||
AtREG462 | ATAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GACGTCGT | + | 9694959 | 9694966 | -128 | -121 | |||
AtREG431 | GACGTCGT | PPDB Motif | ACGT  | PLACE Motif | ACGT  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | G | clone | - | 9694840 | AT5G27460.1 |
TSS clone peak | A | clone | - | 9694823 | AT5G27460.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCTTCTCT | - | 9694866 | 9694875 | AT5G27460.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TACGGCCCAAAT | - | 9694888 | 9694899 | AT5G27460.1 | ||||
AtREG499 | TACGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG368 | ACGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG414 | CGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG373 | GGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG421 | GCCCAAAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ATATGGGCCGGGTAAGCCCAACT | - | 9694908 | 9694930 | AT5G27460.1 | ||||
AtREG432 | ATATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG364 | TATGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG380 | ATGGGCCG | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG457 | TGGGCCGG | CK | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | |||
AtREG404 | GGGCCGGG | CK | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | |||
AtREG426 | TAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG574 | AGCCCAAC | PPDB Motif | GCCCA, CCAACGG  | PLACE Motif | TGGGCY  | ||||
AtREG607 | GCCCAACT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGGCTTAT | - | 9694939 | 9694946 | AT5G27460.1 | ||||
AtREG462 | GGGCTTAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ACGACGTC | - | 9694959 | 9694966 | AT5G27460.1 | ||||
AtREG431 | ACGACGTC | PPDB Motif | ACGT  | PLACE Motif | ACGT  |