PlantPromoterDB promoter information of AT5G27520
Summary of Gene (AT5G27520)
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Overview
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Focused view (chromosome 5: 9717244-9716045)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G27520 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G27520
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 8 | - | 9716305 | -61 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 9716355 | -111 |
| TSS clone | G | clone | - | 9716305 | -61 |
| TSS clone | T | clone | - | 9716279 | -35 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTTCTCTCTTC | - | 9716269 | 9716279 | -25 | -35 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GATGACGT | - | 9716372 | 9716379 | -128 | -135 | |||
| AtREG578 | GATGACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT | |||
| REG | GACCGACT | - | 9716407 | 9716414 | -163 | -170 | |||
| AtREG638 | GACCGACT | DREB1Aox, ABA | PPDB Motif | CCGAC | PLACE Motif | CCGAC, RCCGAC | |||
| REG | ACCACGTGGC | - | 9716450 | 9716459 | -206 | -215 | |||
| AtREG544 | ACCACGTG | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG367 | CACGTGGC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC | |||
| REG | CCGGTTTT | - | 9716470 | 9716477 | -226 | -233 | |||
| AtREG542 | CCGGTTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | ATATTGGG | - | 9716484 | 9716491 | -240 | -247 | |||
| AtREG509 | ATATTGGG | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||