PlantPromoterDB promoter information of AT5G35360.2
Summary of Gene (AT5G35360.2)
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Overview
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Focused view (chromosome 5: 13583300-13584499)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G35360.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G35360.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 26 | + | 13584175 | -125 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | + | 13584159 | -141 |
| TSS clone | A | clone | + | 13584168 | -132 |
| TSS clone | A | clone | + | 13584170 | -130 |
| TSS clone | T | clone | + | 13584171 | -129 |
| TSS clone | T | clone | + | 13584198 | -102 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTCTCTCTCTCTCTCTC | + | 13584198 | 13584214 | -102 | -86 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CTTAATGGGCTTTAT | + | 13583958 | 13583972 | -342 | -328 | |||
| AtREG604 | CTTAATGG | PPDB Motif | PLACE Motif | TTAATGG | |||||
| AtREG396 | TTAATGGG | PPDB Motif | GCCCA | PLACE Motif | TTAATGG | ||||
| AtREG357 | TAATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG372 | AATGGGCT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG378 | ATGGGCTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG376 | TGGGCTTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG365 | GGGCTTTA | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG601 | GGCTTTAT | PPDB Motif | PLACE Motif | ||||||
| REG | TGGCCCATG | + | 13584036 | 13584044 | -264 | -256 | |||
| AtREG490 | TGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG504 | GGCCCATG | PPDB Motif | GCCCA, CCATGG | PLACE Motif | GGGCC, TGGGCY | ||||
| REG | CCCATATA | + | 13584046 | 13584053 | -254 | -247 | |||
| AtREG620 | CCCATATA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TTCCACGT | + | 13584077 | 13584084 | -223 | -216 | |||
| AtREG627 | TTCCACGT | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||