PlantPromoterDB promoter information of AT5G35630
Summary of Gene (AT5G35630)
|
Overview
|
Focused view (chromosome 5: 13830220-13831419)
|
Genome position
from initiation codon AT5G35630.2 AT5G35630.3 TSS from cDNA TSS information AT5G35630 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT5G35630
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 4 | + | 13830474 | -746 |
| TSS peak | A | 111 | + | 13830647 | -573 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 13830429 | -791 |
| TSS clone | T | clone | + | 13830551 | -669 |
| TSS clone | C | clone | + | 13830641 | -579 |
| TSS clone | C | clone | + | 13830646 | -574 |
| TSS clone | A | clone | + | 13830647 | -573 |
| TSS clone | T | clone | + | 13830648 | -572 |
| TSS clone | A | clone | + | 13830649 | -571 |
| TSS clone | A | clone | + | 13830664 | -556 |
| TSS clone | C | clone | + | 13830677 | -543 |
| TSS clone | T | clone | + | 13830680 | -540 |
| TSS clone | G | clone | + | 13830683 | -537 |
| TSS clone | T | clone | + | 13830684 | -536 |
| TSS clone | A | clone | + | 13831020 | -200 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTTATATATT | + | 13830611 | 13830620 | -609 | -600 |
| Y Patch | CTCTTTCT | + | 13830666 | 13830673 | -554 | -547 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TGGGCCTAAC | + | 13830175 | 13830184 | -1045 | -1036 | |||
| AtREG358 | TGGGCCTA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG360 | GGGCCTAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG535 | GGCCTAAC | PPDB Motif | PLACE Motif | ||||||
| REG | AAAGTCAA | + | 13830267 | 13830274 | -953 | -946 | |||
| AtREG632 | AAAGTCAA | PPDB Motif | PLACE Motif | TTGAC | |||||
| REG | CCCATTAT | + | 13830338 | 13830345 | -882 | -875 | |||
| AtREG546 | CCCATTAT | PPDB Motif | PLACE Motif | ||||||
| REG | AAAAAGCC | + | 13830498 | 13830505 | -722 | -715 | |||
| AtREG589 | AAAAAGCC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||