PlantPromoterDB promoter information of AT5G35736.1
Summary of Gene (AT5G35736.1)
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Overview
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Focused view (chromosome 5: 13902436-13903635)
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Genome position
TSS from cDNA TSS information AT5G35736.1 5'->3' (+) Promoter sequence AT5G35735.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G35736.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 13 | - | 13902970 | AT5G35735.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | - | 13902969 | AT5G35735.1 |
| TSS clone | A | clone | - | 13902964 | AT5G35735.1 |
| TSS clone | A | clone | - | 13902963 | AT5G35735.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTTCTATAAATA | - | 13902993 | 13903004 | AT5G35735.1 | |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | GCCTTTAA | - | 13903024 | 13903031 | AT5G35735.1 | ||||
| AtREG639 | GCCTTTAA | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| REG | AAATGGGC | - | 13903071 | 13903078 | AT5G35735.1 | ||||
| AtREG386 | AAATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||