PlantPromoterDB promoter information of AT5G37850.2
Summary of Gene (AT5G37850.2)
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Overview
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Focused view (chromosome 5: 15064621-15065820)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G37850.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G37850.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | C | 5 | + | 15065439 | -182 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 15065589 | -32 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCCTTC | + | 15065401 | 15065408 | -220 | -213 |
| Y Patch | CTTCTCTTCC | + | 15065425 | 15065434 | -196 | -187 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGGGTCCGGTTTAC | + | 15065251 | 15065264 | -370 | -357 | |||
| AtREG491 | CGGGTCCG | PPDB Motif | PLACE Motif | ||||||
| AtREG573 | GTCCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG521 | TCCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG412 | CCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG519 | CGGTTTAC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | CCAAACCGAA | + | 15065274 | 15065283 | -347 | -338 | |||
| AtREG550 | CCAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG568 | AAACCGAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | CGAACCGGTTTG | + | 15065303 | 15065314 | -318 | -307 | |||
| AtREG423 | CGAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG528 | GAACCGGT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG436 | ACCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG496 | CCGGTTTG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | GGGTCAAA | + | 15065358 | 15065365 | -263 | -256 | |||
| AtREG592 | GGGTCAAA | PPDB Motif | PLACE Motif | TTGAC, TTGACC | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||