Summary of Gene (AT5G39570)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT5G39570 5'->3' (+) Promoter sequence AT5G39560.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 259 | + | 15843973 | -166 |
TSS peak | C | 5 | + | 15844119 | -20 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | C | clone | + | 15843972 | -167 |
TSS clone | A | clone | + | 15843973 | -166 |
TSS clone | A | clone | + | 15843974 | -165 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | GTATAAATT | + | 15843937 | 15843945 | -202 | -194 |
Y Patch | CTTCTTCC | + | 15843924 | 15843931 | -215 | -208 |
Y Patch | CTTCTTCTT | + | 15844007 | 15844015 | -132 | -124 |
Y Patch | TCCTCTCTCAT | + | 15844152 | 15844162 | 13 | 23 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCGGTTAAA | + | 15843758 | 15843766 | -381 | -373 | |||
AtREG501 | CCGGTTAA | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
AtREG645 | CGGTTAAA | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
REG | CCCACGTGGCAT | + | 15843816 | 15843827 | -323 | -312 | |||
AtREG464 | CCCACGTG | ABA, Auxin, JA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG  | |||
AtREG367 | CACGTGGC | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC  | |||
AtREG379 | ACGTGGCA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
AtREG448 | CGTGGCAT | ABA, DREB1Aox | PPDB Motif |   | PLACE Motif | GCCAC  | |||
REG | TCAAAACGC | + | 15843892 | 15843900 | -247 | -239 | |||
AtREG653 | TCAAAACG | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG585 | CAAAACGC | PPDB Motif | AAACG(C/G)  | PLACE Motif | CAAAACGC  | ||||
REG | AACGACGTC | + | 15844045 | 15844053 | -94 | -86 | |||
AtREG493 | AACGACGT | PPDB Motif | ACGT  | PLACE Motif | ACGT  | ||||
AtREG431 | ACGACGTC | PPDB Motif | ACGT  | PLACE Motif | ACGT  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |