PlantPromoterDB promoter information of AT5G39600.1
Summary of Gene (AT5G39600.1)
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Overview
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Focused view (chromosome 5: 15855771-15854572)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G39600.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G39600.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | C | 8 | - | 15855167 | -396 |
| TSS peak | A | 8 | - | 15855159 | -388 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 15855192 | -421 |
| TSS clone | T | clone | - | 15855166 | -395 |
| TSS clone | A | clone | - | 15855159 | -388 |
| TSS clone | G | clone | - | 15855158 | -387 |
| TSS clone | C | clone | - | 15855153 | -382 |
| TSS clone | C | clone | - | 15855150 | -379 |
| TSS clone | T | clone | - | 15855149 | -378 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCCTTCTTC | - | 15855134 | 15855144 | -363 | -373 |
| Y Patch | TCTTCTCCT | - | 15855149 | 15855157 | -378 | -386 |
| Y Patch | CTTTCTTC | - | 15855160 | 15855167 | -389 | -396 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAACCGAACCA | - | 15855202 | 15855212 | -431 | -441 | |||
| AtREG568 | AAACCGAA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG556 | AACCGAAC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG451 | ACCGAACC | PPDB Motif | PLACE Motif | ||||||
| AtREG655 | CCGAACCA | PPDB Motif | PLACE Motif | ||||||
| REG | TCGGTTCGGTT | - | 15855257 | 15855267 | -486 | -496 | |||
| AtREG575 | TCGGTTCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG456 | CGGTTCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG451 | GGTTCGGT | PPDB Motif | PLACE Motif | ||||||
| AtREG556 | GTTCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TCGGTTTAC | - | 15855304 | 15855312 | -533 | -541 | |||
| AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG519 | CGGTTTAC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||