PlantPromoterDB promoter information of AT5G40150.1

Summary of Gene (AT5G40150.1)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G40150 TAIR NCBI
Gene model	AT5G40150.1
Description	peroxidase, putative; FUNCTIONS IN: electron carrier activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase, putative (TAIR:AT3G28200.1); Has 3213 Blast hits to 3199 proteins in 258 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 351; Plants - 2806; Viruses - 0; Other Eukaryotes - 52 (source: NCBI BLink).

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Overview

Focused view (chromosome 5: 16061736-16060537)

`Genome position from initiation codon` `TSS from cDNA TSS information AT5G40150.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G40150.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 4 - 16060761 -25

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	4	-	16060761	-25

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone - 16060773 -37

TSS clone C clone - 16060772 -36

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	-	16060773	-37
TSS clone	`C`	clone	-	16060772	-36

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CCTCTTTC - 16060782 16060789 -46 -53

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CCTCTTTC`	-	16060782	16060789	-46	-53
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AAGCGCGTTTT - 16060841 16060851 -105 -115

AtREG492 AAGCGCGT    PPDB Motif ACGCGC PLACE Motif

AtREG566    CGCGTTTT PPDB Motif AAACG(C/G) PLACE Motif

REG ATAAACCGG - 16060909 16060917 -173 -181

AtREG598 ATAAACCG PPDB Motif AACCG(G/A) PLACE Motif

AtREG412 TAAACCGG PPDB Motif AACCG(G/A) PLACE Motif

REG ACCGGTTTAA - 16060931 16060940 -195 -204

AtREG436 ACCGGTTT   PPDB Motif AACCG(G/A) PLACE Motif

AtREG412 CCGGTTTA PPDB Motif AACCG(G/A) PLACE Motif

AtREG473   CGGTTTAA PPDB Motif AACCG(G/A) PLACE Motif

REG CGAACCGA - 16060957 16060964 -221 -228

AtREG575 CGAACCGA PPDB Motif AACCG(G/A) PLACE Motif

REG TCGGTTTAAACCGT - 16061009 16061022 -273 -286

AtREG514 TCGGTTTA       PPDB Motif AACCG(G/A) PLACE Motif

AtREG473 CGGTTTAAACCG PPDB Motif AACCG(G/A) PLACE Motif

AtREG652       TAAACCGT PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AAGCGCGTTTT`		-	16060841	16060851	-105	-115
	AtREG492	`AAGCGCGT`		PPDB Motif	`ACGCGC`	PLACE Motif
	AtREG566	`CGCGTTTT`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
REG	`ATAAACCGG`		-	16060909	16060917	-173	-181
	AtREG598	`ATAAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG412	`TAAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`ACCGGTTTAA`		-	16060931	16060940	-195	-204
	AtREG436	`ACCGGTTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG412	`CCGGTTTA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG473	`CGGTTTAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`CGAACCGA`		-	16060957	16060964	-221	-228
	AtREG575	`CGAACCGA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`TCGGTTTAAACCGT`		-	16061009	16061022	-273	-286
	AtREG514	`TCGGTTTA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG473	`CGGTTTAAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG652	`TAAACCGT`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box TTATAAAAT + 16061103 16061111 AT5G40155.1

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`TTATAAAAT`	+	16061103	16061111	AT5G40155.1
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG ACGCGCTT + 16060844 16060851 AT5G40155.1

AtREG492 ACGCGCTT PPDB Motif ACGCGC PLACE Motif

REG CCGGTTTAT + 16060909 16060917 AT5G40155.1

AtREG412 CCGGTTTA PPDB Motif AACCG(G/A) PLACE Motif

AtREG598 CGGTTTAT PPDB Motif AACCG(G/A) PLACE Motif

REG TTAAACCGGT + 16060931 16060940 AT5G40155.1

AtREG473 TTAAACCG   PPDB Motif AACCG(G/A) PLACE Motif

AtREG412 TAAACCGG PPDB Motif AACCG(G/A) PLACE Motif

AtREG436   AAACCGGT PPDB Motif AACCG(G/A) PLACE Motif

REG TCGGTTCG + 16060957 16060964 AT5G40155.1

AtREG575 TCGGTTCG PPDB Motif AACCG(G/A) PLACE Motif

REG ACGGTTTAAACCGA + 16061009 16061022 AT5G40155.1

AtREG652 ACGGTTTA       PPDB Motif PLACE Motif

AtREG473 CGGTTTAAACCG PPDB Motif AACCG(G/A) PLACE Motif

AtREG514       TAAACCGA PPDB Motif AACCG(G/A) PLACE Motif