PlantPromoterDB promoter information of AT5G40155.1
Summary of Gene (AT5G40155.1)
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Overview
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Focused view (chromosome 5: 16060956-16062155)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G40155.1 5'->3' (+) Promoter sequence AT5G40150.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G40155.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTATAAAAT | + | 16061103 | 16061111 | -853 | -845 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACGCGCTT | + | 16060844 | 16060851 | -1112 | -1105 | |||
| AtREG492 | ACGCGCTT | PPDB Motif | ACGCGC | PLACE Motif | |||||
| REG | CCGGTTTAT | + | 16060909 | 16060917 | -1047 | -1039 | |||
| AtREG412 | CCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG598 | CGGTTTAT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TTAAACCGGT | + | 16060931 | 16060940 | -1025 | -1016 | |||
| AtREG473 | TTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG412 | TAAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG436 | AAACCGGT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TCGGTTCG | + | 16060957 | 16060964 | -999 | -992 | |||
| AtREG575 | TCGGTTCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | ACGGTTTAAACCGA | + | 16061009 | 16061022 | -947 | -934 | |||
| AtREG652 | ACGGTTTA | PPDB Motif | PLACE Motif | ||||||
| AtREG473 | CGGTTTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG514 | TAAACCGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | CGAACCGA | - | 16060957 | 16060964 | AT5G40150.1 | ||||
| AtREG575 | CGAACCGA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | TCGGTTTAAACCGT | - | 16061009 | 16061022 | AT5G40150.1 | ||||
| AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG473 | CGGTTTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG652 | TAAACCGT | PPDB Motif | PLACE Motif | ||||||