Summary of Gene (AT5G40690)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G40690 5'->3' (+) Promoter sequence AT5G40660.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 16290713 | -57 |
TSS clone | T | clone | + | 16290714 | -56 |
TSS clone peak | A | clone | + | 16290746 | -24 |
TSS clone | T | clone | + | 16290754 | -16 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 18 | + | 16285921 | AT5G40670.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | A | clone | - | 16285326 | AT5G40660.1 |
TSS clone peak | C | clone | - | 16285293 | AT5G40660.1 |
TSS clone peak | C | clone | - | 16285178 | AT5G40660.1 |
TSS clone | A | clone | + | 16285863 | AT5G40670.1 |
TSS clone | A | clone | + | 16285922 | AT5G40670.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TCAAAACGGCA | + | 16285643 | 16285653 | AT5G40670.1 | ||||
AtREG653 | TCAAAACG | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG531 | AAAACGGC | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG500 | AAACGGCA | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
REG | ATGACACGTCATC | + | 16285799 | 16285811 | AT5G40670.1 | ||||
AtREG438 | ATGACACG | ABA | PPDB Motif |   | PLACE Motif |   | |||
AtREG389 | TGACACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC  | |||
AtREG481 | GACACGTC | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC  | |||
AtREG517 | ACACGTCA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
AtREG483 | CACGTCAT | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | ||||
AtREG578 | ACGTCATC | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT  | |||
REG | CCCAATAA | + | 16285860 | 16285867 | AT5G40670.1 | ||||
AtREG417 | CCCAATAA | PPDB Motif | GCCCA  | PLACE Motif |   |