PlantPromoterDB promoter information of AT5G40760
Summary of Gene (AT5G40760)
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Overview
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Focused view (chromosome 5: 16306334-16307533)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G40760 5'->3' (+) Promoter sequence AT5G40740.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G40760
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 4 | + | 16310876 | -408 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 16310748 | -536 |
| TSS clone | C | clone | + | 16310877 | -407 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTCCTTCTTCTTCTTCTTCTTC | + | 16310853 | 16310875 | -431 | -409 |
| Y Patch | CTTCTTCTCT | + | 16310884 | 16310893 | -400 | -391 |
| Y Patch | TCTCTCTC | + | 16310895 | 16310902 | -389 | -382 |
| Y Patch | CTTCTTCT | + | 16310917 | 16310924 | -367 | -360 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAATGACG | + | 16310791 | 16310798 | -493 | -486 | |||
| AtREG657 | AAATGACG | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | C | 2 | - | 16306382 | AT5G40740.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | - | 16306413 | AT5G40740.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||