Summary of Gene (AT5G40760)
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Overview |
Genome position
from initiation codon AT5G40760.1 TSS from cDNA TSS information AT5G40760 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 4 | + | 16310876 | -408 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 16310748 | -536 |
TSS clone | C | clone | + | 16310877 | -407 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTTCCTTCTTCTTCTTCTTCTTC | + | 16310853 | 16310875 | -431 | -409 |
Y Patch | CTTCTTCTCT | + | 16310884 | 16310893 | -400 | -391 |
Y Patch | TCTCTCTC | + | 16310895 | 16310902 | -389 | -382 |
Y Patch | CTTCTTCT | + | 16310917 | 16310924 | -367 | -360 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AAATGACG | + | 16310791 | 16310798 | -493 | -486 | |||
AtREG657 | AAATGACG | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |