PlantPromoterDB promoter information of AT5G40770.1
Summary of Gene (AT5G40770.1)
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Overview
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Focused view (chromosome 5: 16317621-16316422)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G40770.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G40770.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 8 | - | 16316680 | -59 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 16316682 | -61 |
| TSS clone | T | clone | - | 16316679 | -58 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTTCTTCCTTCTTCTTCTCTCTC | - | 16316647 | 16316672 | -26 | -51 |
| Y Patch | TCTTTCCTCTCTC | - | 16316684 | 16316696 | -63 | -75 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTGGCCCATTAA | - | 16316748 | 16316759 | -127 | -138 | |||
| AtREG484 | TTGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG490 | TGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG361 | GGCCCATT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG357 | GCCCATTA | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG396 | CCCATTAA | PPDB Motif | GCCCA | PLACE Motif | TTAATGG | ||||
| REG | ATATTGGGCTAA | - | 16316765 | 16316776 | -144 | -155 | |||
| AtREG509 | ATATTGGG | PPDB Motif | PLACE Motif | ||||||
| AtREG355 | TATTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG402 | ATTGGGCT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG571 | TGGGCTAA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| REG | CCCATTAT | - | 16316816 | 16316823 | -195 | -202 | |||
| AtREG546 | CCCATTAT | PPDB Motif | PLACE Motif | ||||||
| REG | TCAGCCCAATG | - | 16316832 | 16316842 | -211 | -221 | |||
| AtREG609 | TCAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG402 | AGCCCAAT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG461 | GCCCAATG | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||