Summary of Gene (AT5G41030.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G41030.1 5'->3' (+) Promoter sequence AT5G41020.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AGGGTATTT | + | 16427821 | 16427829 | -885 | -877 | |||
AtREG567 | AGGGTATT | PPDB Motif | ACCCT  | PLACE Motif |   | ||||
AtREG602 | GGGTATTT | PPDB Motif |   | PLACE Motif |   | ||||
REG | CTAGGCCCAAC | + | 16427908 | 16427918 | -798 | -788 | |||
AtREG475 | CTAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG358 | TAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG356 | AGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG449 | GGCCCAAC | PPDB Motif | GCCCA, CCAACGG  | PLACE Motif | GGGCC, TGGGCY  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 4 | - | 16427772 | AT5G41020.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | - | 16427797 | AT5G41020.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AAATACCCT | - | 16427821 | 16427829 | AT5G41020.1 | ||||
AtREG602 | AAATACCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG567 | AATACCCT | PPDB Motif | ACCCT  | PLACE Motif |   | ||||
REG | GTTGGGCCTAG | - | 16427908 | 16427918 | AT5G41020.1 | ||||
AtREG449 | GTTGGGCC | PPDB Motif | GCCCA, CCAACGG  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG356 | TTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG358 | TGGGCCTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG475 | GGGCCTAG | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  |