PlantPromoterDB promoter information of AT5G41700
Summary of Gene (AT5G41700)
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Overview
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Focused view (chromosome 5: 16675072-16676271)
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Genome position
from initiation codon AT5G41700.2 AT5G41700.3 AT5G41700.4 TSS from cDNA TSS information AT5G41700 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G41700
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 97 | + | 16675839 | -233 |
| TSS peak | G | 2 | + | 16676056 | -16 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | + | 16675824 | -248 |
| TSS clone | T | clone | + | 16675825 | -247 |
| TSS clone | G | clone | + | 16675829 | -243 |
| TSS clone | C | clone | + | 16675830 | -242 |
| TSS clone | A | clone | + | 16675839 | -233 |
| TSS clone | A | clone | + | 16675840 | -232 |
| TSS clone | A | clone | + | 16675843 | -229 |
| TSS clone | T | clone | + | 16675844 | -228 |
| TSS clone | G | clone | + | 16675875 | -197 |
| TSS clone | A | clone | + | 16675896 | -176 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTTCTCTTTC | + | 16675813 | 16675823 | -259 | -249 |
| Y Patch | CTTTCTTC | + | 16675830 | 16675837 | -242 | -235 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGGTCAAA | + | 16675644 | 16675651 | -428 | -421 | |||
| AtREG592 | GGGTCAAA | PPDB Motif | PLACE Motif | TTGAC, TTGACC | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||