Summary of Gene (AT5G41950.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G41950.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 8 | + | 16785775 | -50 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | + | 16785687 | -138 |
TSS clone | T | clone | + | 16785701 | -124 |
TSS clone | A | clone | + | 16785724 | -101 |
TSS clone | C | clone | + | 16785725 | -100 |
TSS clone | A | clone | + | 16785731 | -94 |
TSS clone | G | clone | + | 16785757 | -68 |
TSS clone | A | clone | + | 16785770 | -55 |
TSS clone | T | clone | + | 16785772 | -53 |
TSS clone | T | clone | + | 16785776 | -49 |
TSS clone | G | clone | + | 16785782 | -43 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCTTCTTC | + | 16785732 | 16785741 | -93 | -84 |
Y Patch | TCTTCTTCCTCT | + | 16785743 | 16785754 | -82 | -71 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TAAAACGC | + | 16785546 | 16785553 | -279 | -272 | |||
AtREG564 | TAAAACGC | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
REG | TTGACTTT | + | 16785635 | 16785642 | -190 | -183 | |||
AtREG632 | TTGACTTT | PPDB Motif |   | PLACE Motif | TTGAC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 2 | + | 16789730 | AT5G41960.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCTCTCTC | + | 16789686 | 16789693 | AT5G41960.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TGTTGGGCTAATGGGCTTAT | + | 16789631 | 16789650 | AT5G41960.1 | ||||
AtREG543 | TGTTGGGC | PPDB Motif | GCCCA  | PLACE Motif | CAACA  | ||||
AtREG574 | GTTGGGCT | PPDB Motif | GCCCA, CCAACGG  | PLACE Motif | TGGGCY  | ||||
AtREG571 | TGGGCTAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG558 | CTAATGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG357 | TAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG372 | AATGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG378 | ATGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG426 | TGGGCTTA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG462 | GGGCTTAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGCTTTAACGGCCCATTAA | + | 16789660 | 16789678 | AT5G41960.1 | ||||
AtREG545 | GGCTTTAA | PPDB Motif |   | PLACE Motif |   | ||||
AtREG610 | TTTAACGG | PPDB Motif |   | PLACE Motif | YAACKG, CNGTTR  | ||||
AtREG377 | AACGGCCC | PPDB Motif | GCCCA, AAACG(C/G)  | PLACE Motif | GGGCC  | ||||
AtREG368 | ACGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG380 | CGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG361 | GGCCCATT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG357 | GCCCATTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG396 | CCCATTAA | PPDB Motif | GCCCA  | PLACE Motif | TTAATGG  |