Summary of Gene (AT5G41990.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G41990.1 5'->3' (-) Promoter sequence AT5G42050.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 8 | - | 16798000 | -438 |
TSS peak | A | 8 | - | 16797820 | -258 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 16798026 | -464 |
TSS clone | T | clone | - | 16798004 | -442 |
TSS clone | T | clone | - | 16797999 | -437 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTTTCTCC | - | 16798013 | 16798020 | -451 | -458 |
Y Patch | TTCTTCCT | - | 16798028 | 16798035 | -466 | -473 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TTGACTTT | - | 16798071 | 16798078 | -509 | -516 | |||
AtREG632 | TTGACTTT | PPDB Motif |   | PLACE Motif | TTGAC  | ||||
REG | GGCCTAAA | - | 16798172 | 16798179 | -610 | -617 | |||
AtREG430 | GGCCTAAA | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 13 | + | 16815556 | AT5G42050.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 16815465 | AT5G42050.1 |
TSS clone | C | clone | + | 16815466 | AT5G42050.1 |
TSS clone | A | clone | + | 16815489 | AT5G42050.1 |
TSS clone | T | clone | + | 16815490 | AT5G42050.1 |
TSS clone | T | clone | + | 16815520 | AT5G42050.1 |
TSS clone | C | clone | + | 16815521 | AT5G42050.1 |
TSS clone | C | clone | + | 16815524 | AT5G42050.1 |
TSS clone | C | clone | + | 16815557 | AT5G42050.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TTTATAAAAT | - | 16815279 | 16815288 | AT5G42040.1 | |
Y Patch | TTTCTCTCC | + | 16815514 | 16815522 | AT5G42050.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |