PlantPromoterDB promoter information of AT5G41992.1

Summary of Gene (AT5G41992.1)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G41992 TAIR NCBI
Gene model	AT5G41992.1
Description	Upstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF58 represents a conserved upstream opening reading frame relative to major ORF AT5G41990.1

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Overview

Focused view (chromosome 5: 16786057-16784858)

`Genome position from initiation codon` `TSS from cDNA TSS information AT5G41992.1 5'->3' (-) Promoter sequence AT5G41940.1 AT5G41950.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G41992.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 8 - 16798000 -93

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	8	-	16798000	-93

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone - 16798026 -119

TSS clone T clone - 16798004 -97

TSS clone T clone - 16797999 -92

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	-	16798026	-119
TSS clone	`T`	clone	-	16798004	-97
TSS clone	`T`	clone	-	16797999	-92

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTTTCTCC - 16798013 16798020 -106 -113

Y Patch TTCTTCCT - 16798028 16798035 -121 -128

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTTTCTCC`	-	16798013	16798020	-106	-113
Y Patch	`TTCTTCCT`	-	16798028	16798035	-121	-128
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TTGACTTT - 16798071 16798078 -164 -171

AtREG632 TTGACTTT PPDB Motif PLACE Motif TTGAC

REG GGCCTAAA - 16798172 16798179 -265 -272

AtREG430 GGCCTAAA PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TTGACTTT`		-	16798071	16798078	-164	-171
	AtREG632	`TTGACTTT`		PPDB Motif		PLACE Motif	`TTGAC`
REG	`GGCCTAAA`		-	16798172	16798179	-265	-272
	AtREG430	`GGCCTAAA`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 8 + 16785775 AT5G41950.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	8	+	16785775	AT5G41950.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone + 16785687 AT5G41950.1

TSS clone T clone + 16785701 AT5G41950.1

TSS clone A clone + 16785724 AT5G41950.1

TSS clone C clone + 16785725 AT5G41950.1

TSS clone A clone + 16785731 AT5G41950.1

TSS clone G clone + 16785757 AT5G41950.1

TSS clone A clone + 16785770 AT5G41950.1

TSS clone T clone + 16785772 AT5G41950.1

TSS clone T clone + 16785776 AT5G41950.1

TSS clone G clone + 16785782 AT5G41950.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	+	16785687	AT5G41950.1
TSS clone	`T`	clone	+	16785701	AT5G41950.1
TSS clone	`A`	clone	+	16785724	AT5G41950.1
TSS clone	`C`	clone	+	16785725	AT5G41950.1
TSS clone	`A`	clone	+	16785731	AT5G41950.1
TSS clone	`G`	clone	+	16785757	AT5G41950.1
TSS clone	`A`	clone	+	16785770	AT5G41950.1
TSS clone	`T`	clone	+	16785772	AT5G41950.1
TSS clone	`T`	clone	+	16785776	AT5G41950.1
TSS clone	`G`	clone	+	16785782	AT5G41950.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTCTTCTTC + 16785732 16785741 AT5G41950.1

Y Patch TCTTCTTCCTCT + 16785743 16785754 AT5G41950.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTCTTCTTC`	+	16785732	16785741	AT5G41950.1
Y Patch	`TCTTCTTCCTCT`	+	16785743	16785754	AT5G41950.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TAAAACGC + 16785546 16785553 AT5G41950.1

AtREG564 TAAAACGC PPDB Motif AAACG(C/G) PLACE Motif

REG TTGACTTT + 16785635 16785642 AT5G41950.1

AtREG632 TTGACTTT PPDB Motif PLACE Motif TTGAC