Summary of Gene (AT5G41992.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G41992.1 5'->3' (-) Promoter sequence AT5G41950.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 8 | - | 16798000 | -93 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 16798026 | -119 |
TSS clone | T | clone | - | 16798004 | -97 |
TSS clone | T | clone | - | 16797999 | -92 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTTTCTCC | - | 16798013 | 16798020 | -106 | -113 |
Y Patch | TTCTTCCT | - | 16798028 | 16798035 | -121 | -128 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TTGACTTT | - | 16798071 | 16798078 | -164 | -171 | |||
AtREG632 | TTGACTTT | PPDB Motif |   | PLACE Motif | TTGAC  | ||||
REG | GGCCTAAA | - | 16798172 | 16798179 | -265 | -272 | |||
AtREG430 | GGCCTAAA | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TGGGACCC | + | 16789460 | 16789467 | AT5G41960.1 | ||||
AtREG596 | TGGGACCC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
REG | TGTTGGGCTAATGGGCTTAT | + | 16789631 | 16789650 | AT5G41960.1 | ||||
AtREG543 | TGTTGGGC | PPDB Motif | GCCCA  | PLACE Motif | CAACA  | ||||
AtREG574 | GTTGGGCT | PPDB Motif | GCCCA, CCAACGG  | PLACE Motif | TGGGCY  | ||||
AtREG571 | TGGGCTAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG558 | CTAATGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG357 | TAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG372 | AATGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG378 | ATGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG426 | TGGGCTTA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG462 | GGGCTTAT | PPDB Motif | GCCCA  | PLACE Motif |   |