Summary of Gene (AT5G42000.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G42000.1 5'->3' (+) Promoter sequence AT5G41990.1
AT5G41992.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 4 | + | 16799316 | -139 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CGGGTCGGGTCGGAAAACCGGT | + | 16799100 | 16799121 | -355 | -334 | |||
AtREG375 | CGGGTCGGGTCGG | PPDB Motif | CCGAC  | PLACE Motif | CCGAC  | ||||
AtREG442 | GGGTCGGG | PPDB Motif | CCGAC  | PLACE Motif | CCGAC  | ||||
AtREG405 | GGTCGGGT | PPDB Motif | CCGAC  | PLACE Motif | CCGAC  | ||||
AtREG390 | GTCGGGTC | PPDB Motif | CCGAC, GGGACCC  | PLACE Motif | CCGAC  | ||||
AtREG383 | TCGGGTCG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG542 | AAAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG436 | AAACCGGT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | TAATGGGCCTCT | + | 16799130 | 16799141 | -325 | -314 | |||
AtREG357 | TAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG361 | AATGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG354 | ATGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG447 | TGGGCCTC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG411 | GGGCCTCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 8 | - | 16798000 | AT5G41992.1, AT5G41990.1 |
TSS peak | A | 8 | - | 16797820 | AT5G41990.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | - | 16798026 | AT5G41992.1, AT5G41990.1 |
TSS clone | T | clone | - | 16798004 | AT5G41992.1, AT5G41990.1 |
TSS clone | T | clone | - | 16797999 | AT5G41992.1, AT5G41990.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTTTCTCC | - | 16798013 | 16798020 | AT5G41990.1, AT5G41992.1 | |
Y Patch | TTCTTCCT | - | 16798028 | 16798035 | AT5G41990.1, AT5G41992.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TTGACTTT | - | 16798071 | 16798078 | AT5G41990.1, AT5G41992.1 | ||||
AtREG632 | TTGACTTT | PPDB Motif |   | PLACE Motif | TTGAC  | ||||
REG | GGCCTAAA | - | 16798172 | 16798179 | AT5G41990.1, AT5G41992.1 | ||||
AtREG430 | GGCCTAAA | PPDB Motif |   | PLACE Motif |   |