PlantPromoterDB promoter information of AT5G42020.2
Summary of Gene (AT5G42020.2)
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Overview
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Focused view (chromosome 5: 16811480-16810281)
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Genome position
from initiation codon AT5G42030.1 TSS from cDNA TSS information AT5G42020.2 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G42020.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 10 | - | 16810595 | -115 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 16810590 | -110 |
| TSS clone | T | clone | - | 16810589 | -109 |
| TSS clone | G | clone | - | 16810587 | -107 |
| TSS clone | A | clone | - | 16810577 | -97 |
| TSS clone | C | clone | - | 16810545 | -65 |
| TSS clone | G | clone | - | 16810542 | -62 |
| TSS clone | A | clone | - | 16810541 | -61 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTCTTCTTC | - | 16810558 | 16810567 | -78 | -87 |
| Y Patch | CGTCTTCC | - | 16810626 | 16810633 | -146 | -153 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTCCACGTCATC | - | 16810658 | 16810669 | -178 | -189 | |||
| AtREG513 | GTCCACGT | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| AtREG419 | CCACGTCA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA | ||||
| AtREG483 | CACGTCAT | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | ||||
| AtREG578 | ACGTCATC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT | |||
| REG | TGGCCCAACA | - | 16810781 | 16810790 | -301 | -310 | |||
| AtREG420 | TGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG449 | GGCCCAAC | PPDB Motif | GCCCA, CCAACGG | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG543 | GCCCAACA | PPDB Motif | GCCCA | PLACE Motif | CAACA | ||||
| REG | TTCCGGTTC | - | 16810824 | 16810832 | -344 | -352 | |||
| AtREG534 | TTCCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG579 | TCCGGTTC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | AGTCGGTT | - | 16810840 | 16810847 | -360 | -367 | |||
| AtREG641 | AGTCGGTT | PPDB Motif | AACCG(G/A), CCGAC | PLACE Motif | CCGAC, RCCGAC | ||||
| REG | TTCGGGTCA | - | 16810854 | 16810862 | -374 | -382 | |||
| AtREG597 | TTCGGGTC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| AtREG617 | TCGGGTCA | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||