Summary of Gene (AT5G42030.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G42030.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 8 | - | 16813142 | -55 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 16813182 | -95 |
TSS clone | T | clone | - | 16813095 | -8 |
TSS clone | T | clone | - | 16813090 | -3 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTCTTCTCTCTCTTTC | - | 16813101 | 16813118 | -14 | -31 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TGGCCCAACA | - | 16810781 | 16810790 | AT5G42020.1, AT5G42020.2 | ||||
AtREG420 | TGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG449 | GGCCCAAC | PPDB Motif | GCCCA, CCAACGG  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG543 | GCCCAACA | PPDB Motif | GCCCA  | PLACE Motif | CAACA  | ||||
REG | TTCCGGTTC | - | 16810824 | 16810832 | AT5G42020.1, AT5G42020.2 | ||||
AtREG534 | TTCCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG579 | TCCGGTTC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | AGTCGGTT | - | 16810840 | 16810847 | AT5G42020.1, AT5G42020.2 | ||||
AtREG641 | AGTCGGTT | PPDB Motif | AACCG(G/A), CCGAC  | PLACE Motif | CCGAC, RCCGAC  | ||||
REG | TTCGGGTCA | - | 16810854 | 16810862 | AT5G42020.1, AT5G42020.2 | ||||
AtREG597 | TTCGGGTC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
AtREG617 | TCGGGTCA | PPDB Motif |   | PLACE Motif |   |