PlantPromoterDB promoter information of AT5G42080.1
Summary of Gene (AT5G42080.1)
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Overview
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Focused view (chromosome 5: 16825536-16824337)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G42080.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G42080.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 10 | - | 16824747 | -211 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 16824753 | -217 |
| TSS clone | A | clone | - | 16824752 | -216 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTTATATAAACC | - | 16824779 | 16824790 | -243 | -254 |
| Y Patch | CATCTCTCTCT | - | 16824698 | 16824708 | -162 | -172 |
| Y Patch | CTTTCTTC | - | 16824770 | 16824777 | -234 | -241 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGCTTTTA | - | 16824787 | 16824794 | -251 | -258 | |||
| AtREG549 | GGCTTTTA | PPDB Motif | PLACE Motif | ||||||
| REG | TGCCGTTT | - | 16824829 | 16824836 | -293 | -300 | |||
| AtREG500 | TGCCGTTT | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| REG | TCGTCGTTTT | - | 16824891 | 16824900 | -355 | -364 | |||
| AtREG648 | TCGTCGTT | PPDB Motif | PLACE Motif | ||||||
| AtREG415 | CGTCGTTT | PPDB Motif | PLACE Motif | ||||||
| AtREG520 | GTCGTTTT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||