Summary of Gene (AT5G42540.1)
|
Overview |
Genome position
from initiation codon AT5G42520.2 AT5G42520.3 TSS from cDNA TSS information AT5G42540.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 8 | + | 17007437 | -76 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | + | 17007414 | -99 |
TSS clone | G | clone | + | 17007433 | -80 |
TSS clone | T | clone | + | 17007438 | -75 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TCTAGGGT | + | 17007230 | 17007237 | -283 | -276 | |||
AtREG658 | TCTAGGGT | PPDB Motif | ACCCT  | PLACE Motif |   | ||||
REG | ATCCGGTTCG | + | 17007343 | 17007352 | -170 | -161 | |||
AtREG561 | ATCCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG579 | TCCGGTTC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG423 | CCGGTTCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 4 | + | 17000406 | AT5G42520.1, AT5G42520.2 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 17000324 | AT5G42520.1, AT5G42520.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CGTCTCTC | + | 17000382 | 17000389 | AT5G42520.1, AT5G42520.2 | |
Y Patch | TTCTCTCTCT | + | 17000407 | 17000416 | AT5G42520.1, AT5G42520.2 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |