PlantPromoterDB promoter information of AT5G45620.2

Summary of Gene (AT5G45620.2)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G45620 TAIR NCBI
Gene model	AT5G45620.2
Description	26S proteasome regulatory subunit, putative (RPN9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome regulatory particle, lid subcomplex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome component region PCI (InterPro:IPR000717); BEST Arabidopsis thaliana protein match is: 26S proteasome regulatory subunit, putative (RPN9) (TAIR:AT4G19006.1); Has 757 Blast hits to 754 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 445; Fungi - 133; Plants - 83; Viruses - 0; Other Eukaryotes - 96 (source: NCBI BLink).

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Overview

Focused view (chromosome 5: 18500590-18501789)

`Genome position from initiation codon` `AT5G45620.1 TSS from cDNA TSS information AT5G45620.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G45620.2

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 19 + 18501544 -46

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	19	+	18501544	-46

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone + 18501571 -19

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	+	18501571	-19

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG GCCGGTTCAACCGGTTCACCGGGTC + 18501323 18501347 -267 -243

AtREG637 GCCGGTTC                  PPDB Motif AACCG(G/A) PLACE Motif

AtREG480 CCGGTTCA CCGGTTCA        PPDB Motif AACCG(G/A) PLACE Motif

AtREG640   CGGTTCAA                PPDB Motif AACCG(G/A) PLACE Motif

AtREG528          ACCGGTTC         PPDB Motif AACCG(G/A) PLACE Motif

AtREG463                  ACCGGGTC PPDB Motif AACCG(G/A), GGGACCC PLACE Motif

REG TTCGGTTT + 18501378 18501385 -212 -205

AtREG568 TTCGGTTT PPDB Motif AACCG(G/A) PLACE Motif

REG CCAAACCGGAAA + 18501413 18501424 -177 -166

AtREG550 CCAAACCG     PPDB Motif AACCG(G/A) PLACE Motif

AtREG496 CAAACCGG    PPDB Motif AACCG(G/A) PLACE Motif

AtREG521   AAACCGGA   PPDB Motif AACCG(G/A) PLACE Motif

AtREG534    AACCGGAA PPDB Motif AACCG(G/A) PLACE Motif

AtREG644     ACCGGAAA PPDB Motif AACCG(G/A) PLACE Motif

REG TTAACCGGTC + 18501442 18501451 -148 -139

AtREG501 TTAACCGG   PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG503 TAACCGGT PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG552   AACCGGTC PPDB Motif AACCG(G/A) PLACE Motif

REG CGGTTCGGGTCGGG + 18501460 18501473 -130 -117

AtREG456 CGGTTCGG       PPDB Motif AACCG(G/A) PLACE Motif

AtREG597    TTCGGGTC    PPDB Motif GGGACCC PLACE Motif

AtREG383     TCGGGTCG   PPDB Motif PLACE Motif

AtREG375      CGGGTCGG PPDB Motif CCGAC PLACE Motif CCGAC

AtREG442       GGGTCGGG PPDB Motif CCGAC PLACE Motif CCGAC

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`GCCGGTTCAACCGGTTCACCGGGTC`		+	18501323	18501347	-267	-243
	AtREG637	`GCCGGTTC`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG480	`CCGGTTCA CCGGTTCA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG640	`CGGTTCAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG528	`ACCGGTTC`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG463	`ACCGGGTC`		PPDB Motif	`AACCG(G/A), GGGACCC`	PLACE Motif
REG	`TTCGGTTT`		+	18501378	18501385	-212	-205
	AtREG568	`TTCGGTTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`CCAAACCGGAAA`		+	18501413	18501424	-177	-166
	AtREG550	`CCAAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG496	`CAAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG521	`AAACCGGA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG534	`AACCGGAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG644	`ACCGGAAA`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`TTAACCGGTC`		+	18501442	18501451	-148	-139
	AtREG501	`TTAACCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
	AtREG503	`TAACCGGT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif	`CNGTTR`
	AtREG552	`AACCGGTC`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`CGGTTCGGGTCGGG`		+	18501460	18501473	-130	-117
	AtREG456	`CGGTTCGG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG597	`TTCGGGTC`		PPDB Motif	`GGGACCC`	PLACE Motif
	AtREG383	`TCGGGTCG`		PPDB Motif		PLACE Motif
	AtREG375	`CGGGTCGG`		PPDB Motif	`CCGAC`	PLACE Motif	`CCGAC`
	AtREG442	`GGGTCGGG`		PPDB Motif	`CCGAC`	PLACE Motif	`CCGAC`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None