PlantPromoterDB promoter information of AT5G46110
Summary of Gene (AT5G46110)
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Overview
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Focused view (chromosome 5: 18696606-18697805)
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Genome position
from initiation codon AT5G46110.2 AT5G46110.3 AT5G46110.4 TSS from cDNA TSS information AT5G46110 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G46110
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 128 | + | 18697572 | -34 |
| TSS peak | G | 4 | + | 18697846 | 240 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | + | 18697561 | -45 |
| TSS clone | C | clone | + | 18697565 | -41 |
| TSS clone | C | clone | + | 18697566 | -40 |
| TSS clone | T | clone | + | 18697567 | -39 |
| TSS clone | C | clone | + | 18697568 | -38 |
| TSS clone | T | clone | + | 18697569 | -37 |
| TSS clone | T | clone | + | 18697570 | -36 |
| TSS clone | G | clone | + | 18697572 | -34 |
| TSS clone | C | clone | + | 18697573 | -33 |
| TSS clone | C | clone | + | 18697579 | -27 |
| TSS clone | T | clone | + | 18697582 | -24 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACCGTTAG | + | 18697425 | 18697432 | -181 | -174 | |||
| AtREG603 | ACCGTTAG | PPDB Motif | PLACE Motif | YAACKG, CNGTTR | |||||
| REG | CCGTCCGA | + | 18697509 | 18697516 | -97 | -90 | |||
| AtREG594 | CCGTCCGA | PPDB Motif | PLACE Motif | ||||||
| REG | CGGTTAAA | + | 18697721 | 18697728 | 115 | 122 | |||
| AtREG645 | CGGTTAAA | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||