Summary of Gene (AT5G47060)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G47060 5'->3' (+) Promoter sequence AT5G47070.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 17 | + | 19116791 | -52 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 19116789 | -54 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TTGCTATAAAAT | + | 19116752 | 19116763 | -91 | -80 |
Y Patch | CTTTCTTC | + | 19116775 | 19116782 | -68 | -61 |
Y Patch | CCTCTCTCTCTTTC | + | 19116798 | 19116811 | -45 | -32 |
Y Patch | CTTTCTCTCT | + | 19116813 | 19116822 | -30 | -21 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AAACCGAA | + | 19116521 | 19116528 | -322 | -315 | |||
AtREG568 | AAACCGAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | TAAAAGCC | + | 19116664 | 19116671 | -179 | -172 | |||
AtREG549 | TAAAAGCC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | A | clone | - | 19120723 | AT5G47070.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |