PlantPromoterDB promoter information of AT5G47090.1

Summary of Gene (AT5G47090.1)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G47090 TAIR NCBI
Gene model	AT5G47090.1
Description	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2052, coiled-coil (InterPro:IPR018613); Has 8880 Blast hits to 4216 proteins in 240 species: Archae - 24; Bacteria - 100; Metazoa - 5830; Fungi - 499; Plants - 280; Viruses - 264; Other Eukaryotes - 1883 (source: NCBI BLink).

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Overview

Focused view (chromosome 5: 19126274-19127473)

`Genome position from initiation codon` `TSS from cDNA TSS information AT5G47090.1 5'->3' (+) Promoter sequence AT5G47080.1 AT5G47080.2 AT5G47080.3 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G47090.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 13 + 19127260 -14

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	13	+	19127260	-14

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone G clone + 19127260 -14

TSS clone G clone + 19127266 -8

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`G`	clone	+	19127260	-14
TSS clone	`G`	clone	+	19127266	-8

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG TGTCACGT + 19127029 19127036 -245 -238

AtREG606 TGTCACGT ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

REG ATGGCCCAAGAAAGCCCAACA + 19127153 19127173 -121 -101

AtREG437 ATGGCCCA              PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG420 TGGCCCAA             PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG505   GGCCCAAG            PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG376           AAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407            AAGCCCAA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG574             AGCCCAAC PPDB Motif GCCCA, CCAACGG PLACE Motif TGGGCY

AtREG543              GCCCAACA PPDB Motif GCCCA PLACE Motif CAACA

REG TGTCACGTGAC + 19127197 19127207 -77 -67

AtREG606 TGTCACGT    ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG583 GTCACGTGAC PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`TGTCACGT`		+	19127029	19127036	-245	-238
	AtREG606	`TGTCACGT`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
REG	`ATGGCCCAAGAAAGCCCAACA`		+	19127153	19127173	-121	-101
	AtREG437	`ATGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG420	`TGGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG505	`GGCCCAAG`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG376	`AAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG407	`AAGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG574	`AGCCCAAC`		PPDB Motif	`GCCCA, CCAACGG`	PLACE Motif	`TGGGCY`
	AtREG543	`GCCCAACA`		PPDB Motif	`GCCCA`	PLACE Motif	`CAACA`
REG	`TGTCACGTGAC`		+	19127197	19127207	-77	-67
	AtREG606	`TGTCACGT`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
	AtREG583	`GTCACGTGAC`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 18 - 19126575 AT5G47080.1, AT5G47080.2, AT5G47080.3

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	18	-	19126575	AT5G47080.1, AT5G47080.2, AT5G47080.3

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone - 19126611 AT5G47080.1, AT5G47080.2, AT5G47080.3

TSS clone A clone - 19126565 AT5G47080.1, AT5G47080.2, AT5G47080.3

TSS clone A clone - 19126548 AT5G47080.1, AT5G47080.2, AT5G47080.3

TSS clone A clone - 19126547 AT5G47080.1, AT5G47080.2, AT5G47080.3

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	-	19126611	AT5G47080.1, AT5G47080.2, AT5G47080.3
TSS clone	`A`	clone	-	19126565	AT5G47080.1, AT5G47080.2, AT5G47080.3
TSS clone	`A`	clone	-	19126548	AT5G47080.1, AT5G47080.2, AT5G47080.3
TSS clone	`A`	clone	-	19126547	AT5G47080.1, AT5G47080.2, AT5G47080.3

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTTTCTCT - 19126594 19126602 AT5G47080.1, AT5G47080.2, AT5G47080.3

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTTTCTCT`	-	19126594	19126602	AT5G47080.1, AT5G47080.2, AT5G47080.3
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TTACCCCT - 19126656 19126663 AT5G47080.1, AT5G47080.2, AT5G47080.3

AtREG642 TTACCCCT PPDB Motif ACCCCT PLACE Motif