Summary of Gene (AT5G47220)
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Overview |
Genome position
from initiation codon AT5G47210.2 AT5G47210.3 TSS from cDNA TSS information AT5G47220 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 19172818 | -64 |
TSS clone peak | G | clone | - | 19172812 | -58 |
TSS clone | A | clone | - | 19172804 | -50 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 26 | - | 19171194 | AT5G47210.1, AT5G47210.2, AT5G47210.3 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | G | clone | - | 19171257 | AT5G47210.1, AT5G47210.2, AT5G47210.3 |
TSS clone | C | clone | - | 19171226 | AT5G47210.1, AT5G47210.2, AT5G47210.3 |
TSS clone | T | clone | - | 19171218 | AT5G47210.1, AT5G47210.2, AT5G47210.3 |
TSS clone | T | clone | - | 19171216 | AT5G47210.1, AT5G47210.2, AT5G47210.3 |
TSS clone | C | clone | - | 19171211 | AT5G47210.1, AT5G47210.2, AT5G47210.3 |
TSS clone | T | clone | - | 19171210 | AT5G47210.1, AT5G47210.2, AT5G47210.3 |
TSS clone | A | clone | - | 19171204 | AT5G47210.1, AT5G47210.2, AT5G47210.3 |
TSS clone | T | clone | - | 19171203 | AT5G47210.1, AT5G47210.2, AT5G47210.3 |
TSS clone | G | clone | - | 19171193 | AT5G47210.1, AT5G47210.2, AT5G47210.3 |
TSS clone | A | clone | - | 19171164 | AT5G47210.1, AT5G47210.2, AT5G47210.3 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCTCTCTCTCTC | - | 19171213 | 19171224 | AT5G47210.1, AT5G47210.2, AT5G47210.3 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TTAATGGGCTTA | - | 19171338 | 19171349 | AT5G47210.1, AT5G47210.2, AT5G47210.3 | ||||
AtREG396 | TTAATGGG | PPDB Motif | GCCCA  | PLACE Motif | TTAATGG  | ||||
AtREG357 | TAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG372 | AATGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG378 | ATGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG426 | TGGGCTTA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
REG | TTAATGGGCTTTAA | - | 19171376 | 19171389 | AT5G47210.1, AT5G47210.2, AT5G47210.3 | ||||
AtREG396 | TTAATGGG | PPDB Motif | GCCCA  | PLACE Motif | TTAATGG  | ||||
AtREG357 | TAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG372 | AATGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG378 | ATGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG376 | TGGGCTTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG365 | GGGCTTTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG545 | GGCTTTAA | PPDB Motif |   | PLACE Motif |   | ||||
REG | CTTAATGG | - | 19171413 | 19171420 | AT5G47210.1, AT5G47210.2, AT5G47210.3 | ||||
AtREG604 | CTTAATGG | PPDB Motif |   | PLACE Motif | TTAATGG  | ||||
REG | CCCAATAA | - | 19171484 | 19171491 | AT5G47210.1, AT5G47210.2, AT5G47210.3 | ||||
AtREG417 | CCCAATAA | PPDB Motif | GCCCA  | PLACE Motif |   |