PlantPromoterDB promoter information of AT5G47450
Summary of Gene (AT5G47450)
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Overview
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Focused view (chromosome 5: 19250466-19249267)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G47450 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G47450
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 119 | - | 19249505 | -39 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 19249509 | -43 |
| TSS clone | A | clone | - | 19249504 | -38 |
| TSS clone | A | clone | - | 19249499 | -33 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CACTATATATATACA | - | 19249529 | 19249543 | -63 | -77 |
| Y Patch | CTCTCTTC | - | 19249543 | 19249550 | -77 | -84 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGGTTTGGGC | - | 19249603 | 19249612 | -137 | -146 | |||
| AtREG550 | CGGTTTGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG474 | GTTTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | ATAAGGCC | - | 19249767 | 19249774 | -301 | -308 | |||
| AtREG425 | ATAAGGCC | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | GGCCTTAT | + | 19249767 | 19249774 | AT5G47455.1, AT5G47455.2, AT5G47455.3, AT5G47455.4, AT5G47455.5, AT5G47455.6, AT5G47455.7 | ||||
| AtREG425 | GGCCTTAT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||