PlantPromoterDB promoter information of AT5G47560
Summary of Gene (AT5G47560)
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Overview
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Focused view (chromosome 5: 19289797-19288598)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G47560 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G47560
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 26 | - | 19290398 | -51 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | - | 19290420 | -73 |
| TSS clone | T | clone | - | 19290400 | -53 |
| TSS clone | C | clone | - | 19290397 | -50 |
| TSS clone | G | clone | - | 19290376 | -29 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTTATAAAAA | - | 19290427 | 19290436 | -80 | -89 |
| Y Patch | TTCTCTTCTTCTT | - | 19290407 | 19290419 | -60 | -72 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GCCCAAAC | - | 19290463 | 19290470 | -116 | -123 | |||
| AtREG474 | GCCCAAAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | AAAAGGCC | - | 19290605 | 19290612 | -258 | -265 | |||
| AtREG459 | AAAAGGCC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||