Summary of Gene (AT5G47910.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G47910.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 2 | + | 19397312 | -273 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 19397443 | -142 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ATGACACG | + | 19397195 | 19397202 | -390 | -383 | |||
AtREG438 | ATGACACG | ABA | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | + | 19388744 | AT5G47890.1 |
TSS clone | C | clone | + | 19388745 | AT5G47890.1 |
TSS clone | T | clone | + | 19388746 | AT5G47890.1 |
TSS clone peak | T | clone | + | 19388748 | AT5G47890.1 |
TSS clone | A | clone | + | 19388788 | AT5G47890.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TTATATATATTC | - | 19388588 | 19388599 | AT5G47880.1, AT5G47880.2 | |
Y Patch | TCTCTTTCTCT | - | 19388579 | 19388589 | AT5G47880.1, AT5G47880.2 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AGTCGGTT | - | 19388640 | 19388647 | AT5G47880.1, AT5G47880.2 | ||||
AtREG641 | AGTCGGTT | PPDB Motif | AACCG(G/A), CCGAC  | PLACE Motif | CCGAC, RCCGAC  | ||||
REG | TACTGGGCTTAGGCCCATTAA | - | 19388651 | 19388671 | AT5G47880.1, AT5G47880.2 | ||||
AtREG434 | TACTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG426 | TGGGCTTA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG634 | GGGCTTAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG563 | CTTAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG360 | TTAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG358 | TAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG354 | AGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG361 | GGCCCATT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG357 | GCCCATTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG396 | CCCATTAA | PPDB Motif | GCCCA  | PLACE Motif | TTAATGG  | ||||
REG | TTCGGCCCATTAAG | - | 19388685 | 19388698 | AT5G47880.1, AT5G47880.2 | ||||
AtREG427 | TTCGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG393 | TCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG380 | CGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG361 | GGCCCATT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG357 | GCCCATTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG396 | CCCATTAA | PPDB Motif | GCCCA  | PLACE Motif | TTAATGG  | ||||
AtREG604 | CCATTAAG | PPDB Motif |   | PLACE Motif | TTAATGG  |