Summary of Gene (AT5G48490)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G48490 5'->3' (-) Promoter sequence AT5G48465
AT5G48465.1 AT5G48470.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 5 | - | 19648281 | -44 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 19648280 | -43 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AATACCCT | - | 19648373 | 19648380 | -136 | -143 | |||
AtREG567 | AATACCCT | PPDB Motif | ACCCT  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 4 | + | 19641713 | AT5G48470.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CGTCTTCTTC | + | 19641726 | 19641735 | AT5G48470.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | ATAACCGGT | + | 19641466 | 19641474 | AT5G48470.1 | ||||
AtREG548 | ATAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
AtREG503 | TAACCGGT | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
REG | AGCGCGTGGCTTTTAACCACGTGGT | + | 19641624 | 19641648 | AT5G48470.1 | ||||
AtREG381 | AGCGCGTG | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
AtREG608 | CGTGGCTT | ABA | PPDB Motif |   | PLACE Motif | GCCAC  | |||
AtREG549 | GGCTTTTA | PPDB Motif |   | PLACE Motif |   | ||||
AtREG544 | ACCACGTGGT | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  |