Summary of Gene (AT5G48890.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G48890.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 5 | + | 19820195 | -158 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCTTTCTCTCCCTCTC | + | 19820203 | 19820220 | -150 | -133 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CAAGCCCATA | + | 19819996 | 19820005 | -357 | -348 | |||
AtREG525 | CAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG378 | AAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG477 | AGCCCATA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 10 | + | 19825137 | AT5G48900.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 19825137 | AT5G48900.1 |
TSS clone | A | clone | + | 19825138 | AT5G48900.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CTCTTATATAAT | + | 19825099 | 19825110 | AT5G48900.1 | |
Y Patch | CTTCCTTCTTC | + | 19825149 | 19825159 | AT5G48900.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | ATTAGGCC | + | 19825054 | 19825061 | AT5G48900.1 | ||||
AtREG506 | ATTAGGCC | PPDB Motif |   | PLACE Motif |   |