Summary of Gene (AT5G48900)
|
Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G48900 5'->3' (+) Promoter sequence AT5G48880.1
AT5G48880.2 AT5G48880.3 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 10 | + | 19825137 | -103 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 19825137 | -103 |
TSS clone | A | clone | + | 19825138 | -102 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CTCTTATATAAT | + | 19825099 | 19825110 | -141 | -130 |
Y Patch | CTTCCTTCTTCCTTCTTCTTCTT | + | 19825149 | 19825171 | -91 | -69 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ATTAGGCC | + | 19825054 | 19825061 | -186 | -179 | |||
AtREG506 | ATTAGGCC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 4 | - | 19817843 | AT5G48880.2, AT5G48880.3 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | - | 19817839 | AT5G48880.2, AT5G48880.3 |
TSS clone | T | clone | - | 19817831 | AT5G48880.2, AT5G48880.3 |
TSS clone | A | clone | - | 19817139 | AT5G48880.1, AT5G48880.2, AT5G48880.3 |
TSS clone | G | clone | - | 19817090 | AT5G48880.1, AT5G48880.2, AT5G48880.3 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TTGTATATATAAT | - | 19817864 | 19817876 | AT5G48880.2, AT5G48880.3 | |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |