Summary of Gene (AT5G51950)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G51950 5'->3' (-) Promoter sequence AT5G51960.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | - | 21108605 | -46 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTTTCTTCTCCTCTCC | + | 21110341 | 21110356 | AT5G51960.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TCAAAACG | + | 21110076 | 21110083 | AT5G51960.1 | ||||
AtREG653 | TCAAAACG | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
REG | AAAAGCCCATTA | + | 21110258 | 21110269 | AT5G51960.1 | ||||
AtREG409 | AAAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG376 | AAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG378 | AAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG372 | AGCCCATT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG357 | GCCCATTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TATGGGCT | + | 21110276 | 21110283 | AT5G51960.1 | ||||
AtREG477 | TATGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  |