Summary of Gene (AT5G52290.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT5G52290.1 5'->3' (-) Promoter sequence AT5G52300.1
AT5G52300.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 4 | + | 21237120 | AT5G52300.1, AT5G52300.2 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | G | clone | + | 21237056 | AT5G52300.1, AT5G52300.2 |
TSS clone | A | clone | + | 21237120 | AT5G52300.1, AT5G52300.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TCTCTATAAACT | + | 21237082 | 21237093 | AT5G52300.1, AT5G52300.2 | |
Y Patch | TTCTCTCT | + | 21237079 | 21237086 | AT5G52300.1, AT5G52300.2 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TGATGGGCCAAT | + | 21236864 | 21236875 | AT5G52300.1, AT5G52300.2 | ||||
AtREG635 | TGATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG403 | GATGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG490 | ATGGGCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG484 | TGGGCCAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG446 | GGGCCAAT | CK | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | |||
REG | ACGTGGACCGACT | + | 21236878 | 21236890 | AT5G52300.1, AT5G52300.2 | ||||
AtREG513 | ACGTGGAC | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
AtREG638 | GACCGACT | DREB1Aox, ABA | PPDB Motif | CCGAC  | PLACE Motif | CCGAC, RCCGAC  | |||
REG | AGCCACGTAG | + | 21236957 | 21236966 | AT5G52300.1, AT5G52300.2 | ||||
AtREG450 | AGCCACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
AtREG413 | GCCACGTA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | ||||
AtREG495 | CCACGTAG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | ||||
REG | GACGTGGCAG | + | 21236982 | 21236991 | AT5G52300.1, AT5G52300.2 | ||||
AtREG388 | GACGTGGC | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | ||||
AtREG379 | ACGTGGCA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
AtREG468 | CGTGGCAG | ABA | PPDB Motif |   | PLACE Motif | GCCAC  | |||
REG | TACGTGTCA | + | 21237010 | 21237018 | AT5G52300.1, AT5G52300.2 | ||||
AtREG557 | TACGTGTC | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC  | |||
AtREG389 | ACGTGTCA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC  | |||
REG | TGGTTCGG | + | 21237058 | 21237065 | AT5G52300.1, AT5G52300.2 | ||||
AtREG655 | TGGTTCGG | PPDB Motif |   | PLACE Motif |   |