PlantPromoterDB promoter information of AT5G52920.1
Summary of Gene (AT5G52920.1)
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Overview
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Focused view (chromosome 5: 21462680-21463879)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G52920.1 5'->3' (+) Promoter sequence AT5G52910.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G52920.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 61 | + | 21463543 | -137 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 21463539 | -141 |
| TSS clone | A | clone | + | 21463540 | -140 |
| TSS clone | A | clone | + | 21463543 | -137 |
| TSS clone | A | clone | + | 21463544 | -136 |
| TSS clone | A | clone | + | 21463577 | -103 |
| TSS clone | T | clone | + | 21463621 | -59 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTTCTTCTCC | + | 21463548 | 21463557 | -132 | -123 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTGGCCCACA | + | 21463390 | 21463399 | -290 | -281 | |||
| AtREG484 | TTGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG612 | GGCCCACA | DREB1Aox | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | |||
| REG | TAAATGGGCTTAT | + | 21463405 | 21463417 | -275 | -263 | |||
| AtREG443 | TAAATGGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG386 | AAATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG372 | AATGGGCT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG378 | ATGGGCTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG426 | TGGGCTTA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG462 | GGGCTTAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CGTCGTTTT | + | 21463448 | 21463456 | -232 | -224 | |||
| AtREG415 | CGTCGTTT | PPDB Motif | PLACE Motif | ||||||
| AtREG520 | GTCGTTTT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||