PlantPromoterDB promoter information of AT5G53120
Summary of Gene (AT5G53120)
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Overview
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Focused view (chromosome 5: 21534429-21535628)
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Genome position
from initiation codon AT5G53120.2 AT5G53120.3 AT5G53120.4 AT5G53120.5 TSS from cDNA TSS information AT5G53120 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G53120
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 8 | + | 21534610 | -819 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 21534554 | -875 |
| TSS clone | G | clone | + | 21534584 | -845 |
| TSS clone | A | clone | + | 21534597 | -832 |
| TSS clone | G | clone | + | 21534599 | -830 |
| TSS clone | G | clone | + | 21534601 | -828 |
| TSS clone | A | clone | + | 21534611 | -818 |
| TSS clone | A | clone | + | 21534690 | -739 |
| TSS clone | G | clone | + | 21534755 | -674 |
| TSS clone | G | clone | + | 21534833 | -596 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTAAACCGT | + | 21534399 | 21534407 | -1030 | -1022 | |||
| AtREG473 | TTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG652 | TAAACCGT | PPDB Motif | PLACE Motif | ||||||
| REG | TTGAACCG | + | 21534417 | 21534424 | -1012 | -1005 | |||
| AtREG640 | TTGAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||