PlantPromoterDB promoter information of AT5G53300.2
Summary of Gene (AT5G53300.2)
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Overview
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Focused view (chromosome 5: 21634989-21633790)
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Genome position
from initiation codon AT5G53300.3 TSS from cDNA TSS information AT5G53300.2 5'->3' (-) Promoter sequence AT5G53310.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G53300.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 73 | - | 21634134 | -145 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | - | 21634227 | -238 |
| TSS clone | T | clone | - | 21634226 | -237 |
| TSS clone | C | clone | - | 21634203 | -214 |
| TSS clone | T | clone | - | 21634189 | -200 |
| TSS clone | C | clone | - | 21634186 | -197 |
| TSS clone | T | clone | - | 21634185 | -196 |
| TSS clone | T | clone | - | 21634184 | -195 |
| TSS clone | C | clone | - | 21634182 | -193 |
| TSS clone | C | clone | - | 21634181 | -192 |
| TSS clone | C | clone | - | 21634180 | -191 |
| TSS clone | C | clone | - | 21634179 | -190 |
| TSS clone | T | clone | - | 21634178 | -189 |
| TSS clone | A | clone | - | 21634176 | -187 |
| TSS clone | G | clone | - | 21634175 | -186 |
| TSS clone | T | clone | - | 21634165 | -176 |
| TSS clone | T | clone | - | 21634159 | -170 |
| TSS clone | A | clone | - | 21634153 | -164 |
| TSS clone | C | clone | - | 21634150 | -161 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTCTTCTTCTCTCT | - | 21634155 | 21634168 | -166 | -179 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GCGTCGTTTC | - | 21634332 | 21634341 | -343 | -352 | |||
| AtREG439 | GCGTCGTT | PPDB Motif | PLACE Motif | ||||||
| AtREG415 | CGTCGTTT | PPDB Motif | PLACE Motif | ||||||
| AtREG576 | GTCGTTTC | PPDB Motif | PLACE Motif | ||||||
| REG | CGATGTCGTTTC | - | 21634374 | 21634385 | -385 | -396 | |||
| AtREG630 | CGATGTCG | PPDB Motif | PLACE Motif | ||||||
| AtREG569 | TGTCGTTT | PPDB Motif | PLACE Motif | ||||||
| AtREG576 | GTCGTTTC | PPDB Motif | PLACE Motif | ||||||
| REG | ACCGTTAG | - | 21634405 | 21634412 | -416 | -423 | |||
| AtREG603 | ACCGTTAG | PPDB Motif | PLACE Motif | YAACKG, CNGTTR | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | G | 13 | + | 21634626 | AT5G53310.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | + | 21634591 | AT5G53310.1 |
| TSS clone | A | clone | + | 21634600 | AT5G53310.1 |
| TSS clone | A | clone | + | 21634618 | AT5G53310.1 |
| TSS clone | A | clone | + | 21634622 | AT5G53310.1 |
| TSS clone | C | clone | + | 21634648 | AT5G53310.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | GAAACGACGC | + | 21634332 | 21634341 | AT5G53310.1 | ||||
| AtREG576 | GAAACGAC | PPDB Motif | PLACE Motif | ||||||
| AtREG415 | AAACGACG | PPDB Motif | PLACE Motif | ||||||
| AtREG439 | AACGACGC | PPDB Motif | PLACE Motif | ||||||
| REG | GAAACGACATCG | + | 21634374 | 21634385 | AT5G53310.1 | ||||
| AtREG576 | GAAACGAC | PPDB Motif | PLACE Motif | ||||||
| AtREG569 | AAACGACA | PPDB Motif | PLACE Motif | ||||||
| AtREG630 | CGACATCG | PPDB Motif | PLACE Motif | ||||||
| REG | CTAACGGT | + | 21634405 | 21634412 | AT5G53310.1 | ||||
| AtREG603 | CTAACGGT | PPDB Motif | PLACE Motif | YAACKG, CNGTTR | |||||
| REG | AAACGCGT | + | 21634493 | 21634500 | AT5G53310.1 | ||||
| AtREG633 | AAACGCGT | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| REG | AAGCCACGTC | + | 21634563 | 21634572 | AT5G53310.1 | ||||
| AtREG608 | AAGCCACG | ABA | PPDB Motif | PLACE Motif | GCCAC | ||||
| AtREG450 | AGCCACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | |||
| AtREG388 | GCCACGTC | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC | ||||