PlantPromoterDB promoter information of AT5G53570.1
Summary of Gene (AT5G53570.1)
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Overview
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Focused view (chromosome 5: 21764082-21762883)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G53570.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G53570.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 8 | - | 21763465 | -383 |
| TSS peak | G | 8 | - | 21763429 | -347 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 21763466 | -384 |
| TSS clone | G | clone | - | 21763462 | -380 |
| TSS clone | T | clone | - | 21763435 | -353 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTCCTTCTTCTTCGTCTTCTTTCTTCGTCTCTCTTCT | - | 21763380 | 21763416 | -298 | -334 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CACGCGCTT | - | 21763509 | 21763517 | -427 | -435 | |||
| AtREG381 | CACGCGCT | PPDB Motif | ACGCGC | PLACE Motif | |||||
| AtREG492 | ACGCGCTT | PPDB Motif | ACGCGC | PLACE Motif | |||||
| REG | CGCGCGAG | - | 21763520 | 21763527 | -438 | -445 | |||
| AtREG512 | CGCGCGAG | PPDB Motif | ACGCGC | PLACE Motif | |||||
| REG | AAGCGCGTGT | - | 21763542 | 21763551 | -460 | -469 | |||
| AtREG492 | AAGCGCGT | PPDB Motif | ACGCGC | PLACE Motif | |||||
| AtREG381 | AGCGCGTG | PPDB Motif | ACGCGC | PLACE Motif | |||||
| AtREG385 | GCGCGTGT | PPDB Motif | ACGCGC | PLACE Motif | ACACNNG | ||||
| REG | GAAACGACGC | - | 21763596 | 21763605 | -514 | -523 | |||
| AtREG576 | GAAACGAC | PPDB Motif | PLACE Motif | ||||||
| AtREG415 | AAACGACG | PPDB Motif | PLACE Motif | ||||||
| AtREG439 | AACGACGC | PPDB Motif | PLACE Motif | ||||||
| REG | AACACGTGTCAT | - | 21763661 | 21763672 | -579 | -590 | |||
| AtREG590 | AACACGTG | ABA, JA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG366 | CACGTGTC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC | |||
| AtREG389 | ACGTGTCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG438 | CGTGTCAT | ABA | PPDB Motif | PLACE Motif | |||||
| REG | TAAAAGCC | - | 21763738 | 21763745 | -656 | -663 | |||
| AtREG549 | TAAAAGCC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||