PlantPromoterDB promoter information of AT5G54960
Summary of Gene (AT5G54960)
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Overview
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Focused view (chromosome 5: 22313681-22312482)
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Genome position
from initiation codon TSS from cDNA TSS information AT5G54960 5'->3' (-) Promoter sequence AT5G54970.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT5G54960
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 13 | - | 22312761 | -80 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 22312761 | -80 |
| TSS clone | A | clone | - | 22312760 | -79 |
| TSS clone | T | clone | - | 22312755 | -74 |
| TSS clone | C | clone | - | 22312753 | -72 |
| TSS clone | T | clone | - | 22312745 | -64 |
| TSS clone | T | clone | - | 22312739 | -58 |
| TSS clone | A | clone | - | 22312723 | -42 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CGTCTATAA | - | 22312791 | 22312799 | -110 | -118 |
| Y Patch | CTCTCTCC | - | 22312733 | 22312740 | -52 | -59 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGACACGTGTCA | - | 22312893 | 22312904 | -212 | -223 | |||
| AtREG472 | GGACACGT | ABA, DREB1Aox, Drought | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG366 | GACACGTGTC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC | |||
| AtREG389 | ACGTGTCA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| REG | CGAACCGGGTCGG | - | 22313031 | 22313043 | -350 | -362 | |||
| AtREG423 | CGAACCGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG455 | AACCGGGT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG463 | ACCGGGTC | PPDB Motif | AACCG(G/A), GGGACCC | PLACE Motif | |||||
| AtREG494 | CCGGGTCG | PPDB Motif | PLACE Motif | ||||||
| AtREG375 | CGGGTCGG | PPDB Motif | CCGAC | PLACE Motif | CCGAC | ||||
| REG | GTCACGTGGT | - | 22313051 | 22313060 | -370 | -379 | |||
| AtREG583 | GTCACGTG | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG | ||||
| AtREG544 | CACGTGGT | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||