PlantPromoterDB promoter information of AT5G54970.1

Summary of Gene (AT5G54970.1)

Organism	Arabidopsis thaliana
Chromosome	5
Locus	AT5G54970 TAIR NCBI
Gene model	AT5G54970.1
Description	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26960.1); Has 11 Blast hits to 11 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

#

Overview

Focused view (chromosome 5: 22312271-22313470)

`Genome position from initiation codon` `TSS from cDNA TSS information AT5G54970.1 5'->3' (+) Promoter sequence AT5G54960.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT5G54970.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 13 - 22312761 AT5G54960.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	13	-	22312761	AT5G54960.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone - 22312761 AT5G54960.1

TSS clone A clone - 22312760 AT5G54960.1

TSS clone T clone - 22312755 AT5G54960.1

TSS clone C clone - 22312753 AT5G54960.1

TSS clone T clone - 22312745 AT5G54960.1

TSS clone T clone - 22312739 AT5G54960.1

TSS clone A clone - 22312723 AT5G54960.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	-	22312761	AT5G54960.1
TSS clone	`A`	clone	-	22312760	AT5G54960.1
TSS clone	`T`	clone	-	22312755	AT5G54960.1
TSS clone	`C`	clone	-	22312753	AT5G54960.1
TSS clone	`T`	clone	-	22312745	AT5G54960.1
TSS clone	`T`	clone	-	22312739	AT5G54960.1
TSS clone	`A`	clone	-	22312723	AT5G54960.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box CGTCTATAA - 22312791 22312799 AT5G54960.1

Y Patch CTCTCTCC - 22312733 22312740 AT5G54960.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`CGTCTATAA`	-	22312791	22312799	AT5G54960.1
Y Patch	`CTCTCTCC`	-	22312733	22312740	AT5G54960.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG GGACACGTGTCA - 22312893 22312904 AT5G54960.1

AtREG472 GGACACGT     ABA, DREB1Aox, Drought PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

AtREG366 GACACGTGTC ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC

AtREG389     ACGTGTCA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

REG CGAACCGGGTCGG - 22313031 22313043 AT5G54960.1

AtREG423 CGAACCGG      PPDB Motif AACCG(G/A) PLACE Motif

AtREG455   AACCGGGT    PPDB Motif AACCG(G/A) PLACE Motif

AtREG463    ACCGGGTC   PPDB Motif AACCG(G/A), GGGACCC PLACE Motif

AtREG494     CCGGGTCG PPDB Motif PLACE Motif

AtREG375      CGGGTCGG PPDB Motif CCGAC PLACE Motif CCGAC

REG GTCACGTGGT - 22313051 22313060 AT5G54960.1

AtREG583 GTCACGTG   PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

AtREG544   CACGTGGT ABA, DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG