Summary of Gene (AT5G55230)
|
Overview |
Genome position
from initiation codon AT5G55240.1 TSS from cDNA TSS information AT5G55230 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 17 | + | 22402027 | -689 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | + | 22402028 | -688 |
TSS clone | T | clone | + | 22402035 | -681 |
TSS clone | C | clone | + | 22402064 | -652 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCTTCC | + | 22401983 | 22401990 | -733 | -726 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TGGGTCCCAC | + | 22401960 | 22401969 | -756 | -747 | |||
AtREG615 | TGGGTCCC | ABA | PPDB Motif | GGGACCC  | PLACE Motif |   | |||
AtREG596 | GGGTCCCA | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
AtREG406 | GGTCCCAC | PPDB Motif | GGGACCC  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |