Summary of Gene (AT5G55620)
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Overview |
Genome position
from initiation codon AT5G55610.2 TSS from cDNA TSS information AT5G55620 5'->3' (+) Promoter sequence AT5G55600.1
AT5G55600.2 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 4 | + | 22530206 | -167 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CCTCTATATATATAC | + | 22530168 | 22530182 | -205 | -191 |
Y Patch | CTTCTCCT | + | 22530243 | 22530250 | -130 | -123 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AAATGACG | + | 22530108 | 22530115 | -265 | -258 | |||
AtREG657 | AAATGACG | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | A | clone | - | 22525645 | AT5G55600.1, AT5G55600.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTCTCTCTCGTCTCTC | + | 22525786 | 22525801 | AT5G55610.1, AT5G55610.2 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AAATGACG | + | 22525660 | 22525667 | AT5G55610.1, AT5G55610.2 | ||||
AtREG657 | AAATGACG | PPDB Motif |   | PLACE Motif |   | ||||
REG | TTATTGGGCCTTATATGGG | + | 22525682 | 22525700 | AT5G55610.1, AT5G55610.2 | ||||
AtREG417 | TTATTGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG355 | TATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG352 | ATTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG356 | TTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG353 | TGGGCCTT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG351 | GGGCCTTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG425 | GGCCTTAT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG620 | TATATGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TTAATGGGCCTTAA | + | 22525704 | 22525717 | AT5G55610.1, AT5G55610.2 | ||||
AtREG396 | TTAATGGG | PPDB Motif | GCCCA  | PLACE Motif | TTAATGG  | ||||
AtREG357 | TAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG361 | AATGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG354 | ATGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG353 | TGGGCCTT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG351 | GGGCCTTA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG416 | GGCCTTAA | PPDB Motif |   | PLACE Motif |   | ||||
REG | AAAGTCAA | + | 22525741 | 22525748 | AT5G55610.1, AT5G55610.2 | ||||
AtREG632 | AAAGTCAA | PPDB Motif |   | PLACE Motif | TTGAC  | ||||
REG | AAAGTCAA | + | 22525752 | 22525759 | AT5G55610.1, AT5G55610.2 | ||||
AtREG632 | AAAGTCAA | PPDB Motif |   | PLACE Motif | TTGAC  |